Global Arabidopsis protein interaction and gene regulation network
Dear Arabidopsis community,
we have been constructing a global protein-protein interaction and gene regulation network for Arabidopsis thaliana from multiple databases and directly from the literature (with information extraction and text mining methods). This network is public, see Krallinger et al. Retrieval and Discovery of Cell Cycle Literature and Proteins by Means of Machine Learning, Text Mining and Network Analysis. PACBB 2014, 285-292 http://zope.bioinfo.cnio.es/cellcyle_addmaterial My question would be to compare our interaction network to large scale experimental results, both from protein interaction experiments and from those that cover gene regulatory associations. Could someone point me please to the most comprehensive recent large scale results? Best regards, Martin -------------------------------------------------------------------- Martin Krallinger Structural Computational Biology Group Structural Biology and BioComputing Programme Spanish National Cancer Research Centre (CNIO) -------------------------------------------------------------------- |
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