The soil my yard sits on it extremely rocky. It's very nice soil,
all glacial till and stream bed composition, but more rocks than I
care to count.

Consider digging all of it up (well, one bed or small area at a time
presumably) and putting it through a screen. These screens are
usually homemade from a wood frame and hardware cloth, and look
something like this:
http://archaeology.about.com/od/fiel...ker-Screen.htm

If you really want to get industrial, there are fancier versions of
this with vibrating screens and such, but I've only done the
hand/shovel version.