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RegSite-Plant Database of Plant Regulatory Elements: Release 2
RegSite-Plant Database of Plant Regulatory Elements: Release 2
Softberry developed RegSite-Plant Database describing Plant regulatory Elements and programs for searching them and promoter prediction You can analyze your plant sequence sequence at: http://www.softberry.com/berry.phtml?topic=promoter Second RegSite release contains 702 entries and more descriptive fields than PLACE, including several fields on expression and some others. TSSP - Promoter prediction program in plant genomes uses RegSite motifs with other features. NSITE-PL Program searching for of plant regulatory motifs from Regsite DB. An example of RegSite entry is given below. For list of RegSite entries, click here. Regsite Plant DB: AC RSP00001 DT 19-05- 2002 IS OS Spinach GS rps1 GF nuclear gene rps1 coding for the spinach plastid ribisomal protein CS1 SN S1F_BS SD Negative cis-element conserved in plastid-related genes and binding spinach leaf nuclear factor S1F DE BF S1F, spinach leaf nuclear factor SA Negative; element down-regulating the promoter activity of rps1 SL 5'-end SP -243:-226 SB 1-box SC 1-comp DI SQ agaatgttaccatgaaa SS CS gwwwccatg AL See: [1] MA PT TATA(?) PS OR Mature leaves TI CE Dark-grown de-differentiated soybean suspension cells ON ES Darkness EC Transient expression in soybean cell protoplasts MT Oligonucleotide-directed mutagenesis; DNAase I protection and Gel shift assays RE [1] RS JBC RL 267:23515-23519 (1992) RA Zhou A-X, Li Y-F, Rocipon M, Mache E RT Sequence-specific interaction between S1F, a spinach nuclear factor, and a negative cis-element conserved in plastid-related genes CT 2 TSS (Pos. 351, 391); Site position in relation to TSS 2 (pos. 391) // --- |
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